FastQCFastQC Report
Thu 28 Apr 2016
ERR1041803.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041803.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6720812
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA68050.025.7178521
TCGCTAA5400.017.81481614
GTATTAG21100.017.272511
TATTAGA18250.017.0301382
GTATCAA105000.016.652
TTAACGC2150.016.34883735
CGCTATA5600.014.8660712
ATTAGAG19100.014.8193713
TCTTATA60250.014.58506137
CTTATAC38900.014.45758337
TTAGAGG24500.013.8183674
GTATACG2304.0017767E-1113.6739121
TTTAACG16650.013.66666734
ATCTAGT6450.013.480621
TTAACGG14000.013.34642935
ATCTTAC10850.013.299541
CTCGCTA7550.013.23178913
GTTTAGG11650.013.1802581
TAATACT17050.013.0205274
TATACCG1857.400922E-813.05
Produced by FastQC (version 0.11.5)