FastQCFastQC Report
Thu 28 Apr 2016
ERR1041802.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041802.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29533801
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA207500.022.7795181
GTATCAA290900.016.127882
GTATTAG44450.015.6906631
CTTATAC138450.015.66052737
TATACTG41150.014.7010955
TCTTATA225300.014.51753237
TTAGACT23000.013.9152174
TATTAGA40550.013.5955612
TAATACT41050.012.6187574
GTCCTAA35350.012.2984441
TCTATAC23900.011.8430963
GTATAGA28850.011.798961
TCAACGC397950.011.7568795
ATTAGAG43500.011.6528743
ATCAACG402600.011.6440644
CAACGCA403700.011.603176
TCTAGAC30950.011.5961243
TTTAACG28400.011.5950734
TATTAGG23650.011.5771672
TTAACGG23200.011.562535
Produced by FastQC (version 0.11.5)