Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041801.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3713351 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4478 | 0.12059188587343346 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4466 | 0.12026872762634074 | No Hit |
TATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACATA | 4003 | 0.10780020525934661 | No Hit |
GGTATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACA | 3841 | 0.10343756892359489 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7925 | 0.0 | 30.767193 | 1 |
GTATCAA | 11640 | 0.0 | 20.915808 | 2 |
GCGGAAT | 245 | 0.0 | 20.387754 | 19 |
CGCGAAA | 65 | 6.907435E-5 | 19.923075 | 15 |
GCTTACC | 520 | 0.0 | 19.567307 | 28 |
TCGTAGC | 280 | 0.0 | 18.5 | 14 |
TAGCGGA | 280 | 0.0 | 17.839285 | 17 |
CGTAGCG | 290 | 0.0 | 17.224138 | 15 |
CGTCTAA | 245 | 0.0 | 16.612244 | 1 |
GTCGTAG | 325 | 0.0 | 16.507692 | 13 |
GTCGTAT | 115 | 1.243945E-6 | 16.086956 | 13 |
TATACTG | 325 | 0.0 | 15.938461 | 5 |
GTATAAA | 395 | 0.0 | 15.92405 | 1 |
TATACAC | 1470 | 0.0 | 15.731293 | 37 |
GTATTAA | 355 | 0.0 | 15.633803 | 1 |
TATAGTG | 430 | 0.0 | 15.488372 | 5 |
AATCGGG | 335 | 0.0 | 15.462687 | 23 |
CTTACCT | 670 | 0.0 | 15.462687 | 29 |
CTAGACT | 360 | 0.0 | 15.416666 | 4 |
TTAGTAC | 160 | 1.0988515E-8 | 15.03125 | 3 |