FastQCFastQC Report
Thu 28 Apr 2016
ERR1041800.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041800.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5469637
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA49200.026.4715441
GTATTAG9600.018.8854181
GTATCAA69450.018.619872
TATTAGA8600.017.854652
TCTATAC4000.017.11253
ATTAGAG8600.016.3488373
ATACCGA2650.016.0566046
TTAACGC1504.6820787E-916.03333335
TATACTG7400.015.755
CTTATAC36400.015.45054937
TCGCTAA2850.014.92982414
TAGACCG1956.7484507E-1014.230775
GTATACG1956.7484507E-1014.230771
TCTTATA53950.014.02502337
TATACAC14800.014.037
TCTAACG1203.30482E-513.8750012
TATTAGG4700.013.7765962
CGTAAAC7000.013.47857132
TTTAACG7550.013.47682234
GTCGTAA7100.013.28873330
Produced by FastQC (version 0.11.5)