Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041799.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6139343 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACATA | 8676 | 0.141318053088091 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 8281 | 0.13488413988272033 | No Hit |
GGTATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACA | 8135 | 0.13250603525491245 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7431 | 0.12103901020027713 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7408 | 0.12066437727945808 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGC | 260 | 0.0 | 24.903847 | 35 |
GGTATCA | 18740 | 0.0 | 22.093382 | 1 |
GTATTAG | 2575 | 0.0 | 19.398058 | 1 |
ATTAGAG | 2025 | 0.0 | 19.093828 | 3 |
TATTAGA | 2330 | 0.0 | 18.817596 | 2 |
TCGCTAA | 715 | 0.0 | 17.853148 | 14 |
CGTATTA | 400 | 0.0 | 17.575 | 15 |
TTTAGCG | 445 | 0.0 | 17.460674 | 26 |
ATTAGAC | 385 | 0.0 | 17.2987 | 3 |
TTAGAGG | 2515 | 0.0 | 16.91849 | 4 |
GTATCAA | 25240 | 0.0 | 16.411055 | 2 |
GCTTACC | 795 | 0.0 | 16.289307 | 28 |
TATACTG | 615 | 0.0 | 16.243902 | 5 |
GGGCTTA | 800 | 0.0 | 16.1875 | 26 |
ATCTTAC | 1235 | 0.0 | 15.878542 | 1 |
TATACAC | 2440 | 0.0 | 15.846312 | 37 |
GTACTAG | 375 | 0.0 | 15.786668 | 1 |
CGCTATA | 365 | 0.0 | 15.71233 | 2 |
TTAGCGA | 780 | 0.0 | 15.653847 | 27 |
ACCGCCT | 2450 | 0.0 | 15.630612 | 12 |