Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041768.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13361302 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 30173 | 0.2258238007044523 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27765 | 0.20780160496334862 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGT | 21457 | 0.16059063705019166 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19002 | 0.14221667918291198 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8605 | 0.0 | 25.66996 | 1 |
GTATCAA | 12855 | 0.0 | 17.08246 | 2 |
TACACAT | 6645 | 0.0 | 15.869075 | 5 |
ATCTCCG | 5820 | 0.0 | 15.6073885 | 10 |
TATACAC | 6720 | 0.0 | 15.389136 | 3 |
ATCTCGT | 5660 | 0.0 | 15.133392 | 37 |
ACACATC | 6790 | 0.0 | 14.494845 | 6 |
ACGAGAC | 6160 | 0.0 | 14.385551 | 22 |
TCTCCGA | 6240 | 0.0 | 14.349358 | 11 |
ATACACA | 8535 | 0.0 | 14.045694 | 4 |
CCCACGA | 6485 | 0.0 | 13.77872 | 19 |
GTATTAG | 3395 | 0.0 | 13.622975 | 1 |
TAATACT | 4050 | 0.0 | 13.566666 | 4 |
TCTTATA | 13825 | 0.0 | 13.501989 | 37 |
CACGAGA | 6590 | 0.0 | 13.474962 | 21 |
CGAGCCC | 6760 | 0.0 | 13.327663 | 15 |
TATACCG | 560 | 0.0 | 13.214285 | 5 |
CTAATAC | 3590 | 0.0 | 13.1922 | 3 |
CATCTCG | 6660 | 0.0 | 13.027778 | 36 |
GCCCACG | 6975 | 0.0 | 12.996416 | 18 |