FastQCFastQC Report
Thu 28 Apr 2016
ERR1041755.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041755.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7846181
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT230440.2936970227936368No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT228500.2912244823309582No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT166150.21175907106909717No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT89400.11394078214611669No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT85750.10928883746118016No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA82750.021.305741
TTAACGG9250.016.035
ATCTCCG26250.015.22285710
TACACAT33800.014.8875735
TATACTG15450.014.7281565
TAACGGC9950.014.68844336
TAATACT25600.014.6699224
ACGAGAC27050.014.635859522
GTATTAG21350.014.5573771
CTAATAC23150.014.2246223
ATCTCGT25550.014.19178137
GTATCAA124150.014.1711642
TCTCCGA28650.014.07678911
CCCACGA28950.013.80310819
CGCGTAT1409.5749765E-613.21428512
TCTATAC11350.013.0396483
GTATACG3000.012.951
ACACATC34450.012.9419446
CTTATAC82100.012.91169437
CGAGCCC30800.012.85389615