FastQCFastQC Report
Thu 28 Apr 2016
ERR1041736.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041736.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8665413
Sequences flagged as poor quality0
Sequence length43
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1566801.808107703579737No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1037651.1974616789759471No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT795670.9182135923584945No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT633960.7315981361765446No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA435030.5020303129233424No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT330210.3810666612197249No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC326510.3767968128004978No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG238010.27466665466493057No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA232830.2686888668780126No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220900.2549214907587209No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220140.2540444408131499No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT203380.23470318148713742No Hit
GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA169810.19596296218079853No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG162590.18763098769787429No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG151370.17468296086983967No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA135690.15658803567700696No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT134520.15523784036606217No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA124550.14373232989587453No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC115650.13346161342800394No Hit
GAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA114060.13162673262082256No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA113960.13151133131219483No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA107490.12404486664397878No Hit
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA102640.11844790317553243No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG102080.11780165584721698No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT99100.11436269685010975No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT97010.11195080949978956No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA96910.1118354081911618No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT94320.10884651429770283No Hit
CGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92650.10691931244361924No Hit
GTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA87980.10153007133070287No Hit
GAATGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA87480.10095306478756408No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA87020.10042221876787637No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG15550.016.5369765
CTAGTAC3450.016.0869563
TACCGTC10500.015.8571427
GACTTTT36700.015.7779294
GACGGAC14850.015.1986537
TCGTTTA9850.015.02538130
GAGGACT38800.014.9716491
GGACTTT38700.014.9625333
ACCGTCG9650.014.9533688
ATACCGT12650.014.9169966
CGTCGTA9850.014.46192910
ACGGACC15650.014.30351458
GGTTATC9300.014.1236552
CCGTCGT10050.013.9900499
AGGACTT42250.013.7053262
AGACGGA17700.013.692096
GAACAGT168600.013.6610321
CAAGACG19400.013.6365984
GTATTAG19600.013.4974491
TCTAGCG8000.013.41249928