FastQCFastQC Report
Thu 28 Apr 2016
ERR1041730.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041730.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2034793
Sequences flagged as poor quality0
Sequence length43
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT453502.228727934487685No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT339241.6671966141027612No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT253471.2456795359527972No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC197100.9686488994212188No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT189890.9332153196909956No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA156350.768382828130429No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA146670.7208104215023347No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG128590.6319561744118444No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT113040.5555356245082423No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG101520.49892052901695655No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG90160.443091754296383No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT83640.4110491828898566No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC80970.397927455028595No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT75960.37330578589566604No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA70560.3467674598841258No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65480.32180177541401017No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT61320.30135743537549026No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG57970.2848938442387014No Hit
GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA54880.26970802435432006No Hit
GAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA46500.22852447398826317No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA45070.221496732100022No Hit
CGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43300.2127980585740171No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41100.20198614797672293No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC40000.19658019267807586No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC39390.1935823447397352No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT38790.19063364184956405No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA38030.18689861818868062No Hit
GAACATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA37050.18208240346806776No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA36570.17972344115593086No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT36560.17967429610776134No Hit
CAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34690.17048417210006128No Hit
GAAGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA31980.15716586404612165No Hit
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA31880.15667441356442646No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31820.15637954327540934No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC31680.1556915126010361No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA31320.1539222908669334No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA31290.15377485572242483No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG30900.1518581988438136No Hit
GTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30750.15112102312127082No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT30720.15097358797676225No Hit
CATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA30660.15067871768774513No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30320.1490077860499815No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG29770.14630480840065796No Hit
GAATGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA27960.13740955468197502No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT27100.1331830805393964No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT27070.13303564539488782No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA27060.1329865003467183No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG26870.13205274443149745No Hit
GAGTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAA25340.12453355206156105No Hit
CAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA24840.12207629965308511No Hit
GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA24540.12060194820799953No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC24250.11917674181108348No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC24220.11902930666657494No Hit
GAGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23770.11681777949894658No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC22870.11239472516368987No Hit
GAACTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA22810.11209985487467275No Hit
GCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA21260.10448237240839732No Hit
GGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA21240.10438408231205829No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA20880.1026148605779556No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG20640.10143537942188714No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATGC656.905473E-519.9230773
GATAAGT1500.019.7333341
CGTTATA851.2462733E-619.5882362
TCTAGAC1103.8558937E-818.53
ATATAAC1205.180482E-918.53
TATAGTG1002.877623E-718.4999985
AAAAGTA9650.018.4041462
GTATTAG2950.018.1864411
GAGGACT9850.018.0304571
AGGACTT9850.017.8426382
TAGACAG1800.017.4722215
GATACAT2250.017.2666661
GGACTTT10200.017.2303923
TAAGTTC1757.2759576E-1216.9142863
GACTTTT10400.016.8990384
GCTCTTA1901.8189894E-1216.5526311
CACGCAG4250.016.5411785
ATAGTAC1352.2220775E-816.4444453
GAACTTA4450.016.2134841
AAAAAGT10900.016.1238541