FastQCFastQC Report
Thu 28 Apr 2016
ERR1041729.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041729.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1127036
Sequences flagged as poor quality0
Sequence length43
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT216111.917507515287888No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT205271.8213260268527358No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT130461.1575495370156765No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA121591.078847525722337No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT89850.7972238686253146No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG82290.7301452659897287No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG71750.6366256268655127No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG70350.6242036634144783No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC67360.5976738986154835No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52750.4680418371729031No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC46130.4093036957115833No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG43860.3891623692588347No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40340.3579300040105196No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT37390.33175515245298287No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC34400.305225387653988No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT34300.30433810455034266No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC32520.2885444653054561No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG31090.27585631692332807No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG30320.2690242370252592No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT26840.23814678501840225No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG25040.2221756891527866No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA24840.220401122945496No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT24520.21756181701383095No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG24130.21410141290961424No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT23590.20931008414992958No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA20640.18313523259239278No Hit
GAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA20510.18198176455765389No Hit
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACA18420.16343754769146682No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA18160.16113061162198902No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG17820.15811384906959494No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16970.15057194268860977No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC15750.13974708882413694No Hit
CATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA15690.13921471896194976No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT15230.1351332166851813No Hit
AAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG15170.1346008468229941No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC15080.13380229202971333No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT14360.12741385368346708No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA14060.12475200437253113No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT13950.12377599295852128No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA13740.12191269844086612No Hit
GAAGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA13660.12120287195794988No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC13300.11800865278482676No Hit
GTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13220.1172988263019105No Hit
CGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12880.11428206374951642No Hit
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA12850.11401587881842284No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG12730.11295113909404846No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC12670.11241876923186125No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC12390.1099343765416544No Hit
CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGG12300.10913582174837361No Hit
CATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAA11900.10558668933379235No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11750.10425576467832438No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCT11700.10381212312650173No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11640.10327975326431453No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT11300.10026299071192048No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACGA701.9228537E-723.78571516
GGACCGT400.00193116423.1256
TAACGAA753.7406426E-722.19999913
TAACACG502.7020572E-422.1999994
TGTCGTA603.726204E-521.58333237
GTTATAC603.726204E-521.5833323
CCGATAA806.959872E-720.81259
GTTATCT1001.2896635E-820.3499983
TGTTCGA656.90198E-519.92307710
CTGTTCG656.90198E-519.9230779
ATAACGA851.2452638E-619.58823612
TCCGATA902.152141E-618.58
GCTAGAC500.007034818.49999813
TACCCTA1351.1514203E-917.8148165
TTATCTA1258.576535E-917.764
GACGGAC1900.017.5263167
CGTCAGA953.6062593E-617.5263161
CGATAAC953.6062593E-617.52631610
ACGAACG953.6062593E-617.52631615
TAAGACT852.7230384E-517.4117644