Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041728.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6475983 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27991 | 0.4322278177691325 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19412 | 0.2997537207864814 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 17412 | 0.2688703784429329 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 10480 | 0.16182871388019396 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 8882 | 0.1371529233476987 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 8090 | 0.12492311977965354 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 7116 | 0.10988293205834543 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 6812 | 0.10518866402212607 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 6687 | 0.10325845512565428 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 6615 | 0.10214665480128653 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 1320 | 0.0 | 14.715909 | 7 |
TCGTTTA | 770 | 0.0 | 14.415584 | 30 |
AAGACGG | 1555 | 0.0 | 14.276528 | 5 |
AACCGTA | 210 | 1.364242E-10 | 14.095238 | 7 |
ACGGACC | 1375 | 0.0 | 13.992728 | 8 |
CGAACTA | 295 | 0.0 | 13.79661 | 24 |
TATACTG | 1180 | 0.0 | 13.79661 | 5 |
CGAACGT | 405 | 0.0 | 13.703704 | 4 |
CAAGACG | 1625 | 0.0 | 13.661538 | 4 |
TAGAGTG | 1055 | 0.0 | 13.50237 | 5 |
TACACCG | 530 | 0.0 | 13.26415 | 5 |
TTAGACT | 765 | 0.0 | 13.058824 | 4 |
TAGACTA | 525 | 0.0 | 13.0380945 | 5 |
TCGAACG | 430 | 0.0 | 12.906978 | 3 |
TACGACG | 775 | 0.0 | 12.890322 | 5 |
GTACCGT | 130 | 7.0075694E-5 | 12.807693 | 6 |
ATACCGT | 1305 | 0.0 | 12.758621 | 6 |
ACCGTCG | 965 | 0.0 | 12.65285 | 8 |
AGACGGA | 1625 | 0.0 | 12.40923 | 6 |
TACCGTC | 1075 | 0.0 | 12.3906975 | 7 |