Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041724.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5545768 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 22006 | 0.3968070788392158 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20976 | 0.37823435816283696 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11981 | 0.21603860817834428 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8603 | 0.15512729706688055 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGT | 6402 | 0.11543937647590019 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7335 | 0.0 | 24.36401 | 1 |
TACCCGC | 315 | 0.0 | 17.031746 | 11 |
GTATCAA | 10545 | 0.0 | 16.912281 | 2 |
GTCGCCC | 1420 | 0.0 | 16.676056 | 37 |
CCGAGTT | 615 | 0.0 | 15.642276 | 13 |
CGTTCGG | 95 | 7.0674636E-5 | 15.578948 | 24 |
TGTACTA | 900 | 0.0 | 15.416667 | 5 |
AGGTCGC | 1580 | 0.0 | 15.22152 | 35 |
TTTAGCG | 540 | 0.0 | 15.074075 | 26 |
ACGAACG | 470 | 0.0 | 14.957447 | 29 |
TACACAT | 2780 | 0.0 | 14.640286 | 5 |
TCTATAC | 950 | 0.0 | 14.605263 | 3 |
GCTCCGA | 1685 | 0.0 | 14.602373 | 29 |
ATCTCGT | 1955 | 0.0 | 14.572889 | 37 |
CCGAGGT | 1615 | 0.0 | 14.547988 | 32 |
TGCTCGG | 1890 | 0.0 | 14.486773 | 10 |
ACGAGAC | 2130 | 0.0 | 14.41784 | 22 |
GCTCGGA | 1825 | 0.0 | 14.39452 | 11 |
GTACTAG | 2070 | 0.0 | 14.388889 | 30 |
TAATCGG | 515 | 0.0 | 14.368933 | 16 |