FastQCFastQC Report
Thu 28 Apr 2016
ERR1041724.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041724.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5545768
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT220060.3968070788392158No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT209760.37823435816283696No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT119810.21603860817834428No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT86030.15512729706688055No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGT64020.11543937647590019No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA73350.024.364011
TACCCGC3150.017.03174611
GTATCAA105450.016.9122812
GTCGCCC14200.016.67605637
CCGAGTT6150.015.64227613
CGTTCGG957.0674636E-515.57894824
TGTACTA9000.015.4166675
AGGTCGC15800.015.2215235
TTTAGCG5400.015.07407526
ACGAACG4700.014.95744729
TACACAT27800.014.6402865
TCTATAC9500.014.6052633
GCTCCGA16850.014.60237329
ATCTCGT19550.014.57288937
CCGAGGT16150.014.54798832
TGCTCGG18900.014.48677310
ACGAGAC21300.014.4178422
GCTCGGA18250.014.3945211
GTACTAG20700.014.38888930
TAATCGG5150.014.36893316