Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041719.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 118113 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGT | 1692 | 1.4325264788803942 | No Hit |
TCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT | 490 | 0.41485695901382574 | TruSeq Adapter, Index 11 (95% over 21bp) |
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATG | 402 | 0.34035203576236317 | No Hit |
CATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTC | 346 | 0.2929398118750688 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 294 | 0.24891417540829544 | No Hit |
ACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCC | 286 | 0.24214100056725338 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 239 | 0.20234859837613134 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 128 | 0.10837079745667284 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGACC | 20 | 0.0018352575 | 37.0 | 4 |
TTATACA | 220 | 0.0 | 31.113636 | 2 |
CTTATAC | 225 | 0.0 | 30.422222 | 1 |
CACACTA | 25 | 0.0054766433 | 29.6 | 37 |
CAGTAGG | 25 | 0.0054766433 | 29.6 | 22 |
TATACAC | 225 | 0.0 | 29.6 | 3 |
CTAGGAC | 25 | 0.0054766433 | 29.6 | 3 |
GGTATCA | 160 | 0.0 | 27.750002 | 1 |
ATACACA | 270 | 0.0 | 25.351852 | 4 |
AATCTCG | 55 | 1.8839874E-5 | 23.545454 | 6 |
TACACAT | 295 | 0.0 | 23.20339 | 5 |
TACTATC | 50 | 2.682262E-4 | 22.2 | 7 |
AAATCTC | 60 | 3.689977E-5 | 21.583334 | 5 |
ACACATC | 320 | 0.0 | 20.8125 | 6 |
GACACAT | 45 | 0.00380582 | 20.555557 | 26 |
TAAACCT | 45 | 0.00380582 | 20.555557 | 4 |
GTGACAC | 45 | 0.00380582 | 20.555557 | 24 |
GAGGCAC | 45 | 0.00380582 | 20.555557 | 7 |
GTATTAG | 55 | 5.105637E-4 | 20.181818 | 1 |
ATTAGAG | 55 | 5.105637E-4 | 20.181818 | 3 |