FastQCFastQC Report
Thu 28 Apr 2016
ERR1041712.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041712.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10542925
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC750630.7119750923012351No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG550330.5219898652413822No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA518020.4913437210261858No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC337350.3199776153202266No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG284790.2701242776553945No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT270080.256171792932227No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG252240.23925049262894313No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG239850.2274985357479068No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT184280.1747902029085856No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA169240.16052471206994262No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT150500.14274975872445264No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC148790.1411278179442612No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT144310.13687852280083562No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC141830.1345262344178679No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG141170.13390022218691683No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT132820.12598021896200534No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC127640.12106697145241951No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC126180.11968215651728528No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA122730.11640981985549552No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT116340.11034888325583271No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT108960.10334892830974327No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC108510.10292210178864025No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT107490.10195462834080675No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC107140.10162265215772663No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG106380.10090178958875265No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATAACG6800.014.6911752
CGAACGT10400.014.5865384
TAATACT27200.014.4871314
AAGACGG32600.014.4708595
TTAGAGT19050.014.3727044
TATACTG12850.014.1089495
TCGAACG10850.013.9815673
TAGAGTG20950.013.8639615
TCGTTTA21300.013.72300430
ATTAGAG26750.013.6934593
ATTAGAC7250.013.5241383
ACCGTCG22650.013.4768218
TACCGTC23550.013.4331217
ACGGACC34250.013.3416068
TAGACCG1254.851725E-513.325
GACGGAC34050.013.3113077
CGTTATA1951.0290023E-813.282052
TTAACGG7000.013.21428535
ATAACGC32500.013.2061543
CGTCGTA23000.013.19130410