FastQCFastQC Report
Thu 28 Apr 2016
ERR1041630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6695311
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC1432522.139586943758102No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG1055341.576237459320411No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA914961.3665683341670014No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT710341.0609514628969439No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT631000.9424506195455297No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG614370.9176123409353202No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT528130.7888057776554368No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG500060.7468809141203449No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC496300.7412650435506282No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT457640.6835231402992333No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG403270.6023170544280915No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA351220.5245760801850727No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC350850.5240234546236912No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT341790.5104915962828314No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT296630.4430414061422987No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC243780.36410556582061687No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT229240.3423888748409148No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC219820.32831932676465664No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG203160.3034362406764973No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA193260.2886497729530413No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG189470.2829890949053748No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT181800.2715333163761922No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC181120.2705176802093286No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC168390.2515043737326018No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT163140.24366306509137511No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG162390.24254287814262845No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC160510.23973494285777017No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG155260.2318936342165435No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT149840.22379841653360089No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT148880.22236457723920516No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG147430.22019888247162828No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCT131460.1963463683763159No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC130040.19422548108668888No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT129680.19368779135129047No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT125310.18716083539659323No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA124820.1864289799234121No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCT122700.18326258481495483No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA117670.1757498643453605No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC114890.1715977047220062No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111270.16619093571605562No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCT108300.1617549953990188No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG106240.15867821524646128No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG103920.15521310361833826No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT97110.14504180612371853No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT95960.14332418613564032No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT95160.14212932005697718No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT90670.1354231341904805No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA85560.12779092711301984No Hit
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC78390.1170819398830017No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTC75710.11307913851948029No Hit
AAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG73570.10988287175905645No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCT72330.10803082933712864No Hit
CTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA67960.10150387338243139No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT67930.10145906590448152No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCAG11000.021.5272715
TATAACG11550.021.303032
CGTTATA1303.274181E-1119.9230772
GTATAAC13400.019.8805961
TATCACG11900.019.4327742
CTAACGC801.6185702E-518.53
ATCACGC12900.017.9263573
ATAACGC17850.017.5154083
TCACGCA14600.016.8527414
TACAACG4250.016.5411782
CGAACGA9550.016.27225116
TAACGCA16200.016.1018524
GTACTCC38300.015.891644536
TCGTAGC4550.015.85714214
GCGGAAT4600.015.68478319
TTAGCGA3900.015.65384727
TCGACCG957.067809E-515.57894818
GATAACG10500.014.9761911
CGTAGCG4700.014.95744715
GTATCAC16500.014.9121221