FastQCFastQC Report
Thu 28 Apr 2016
ERR1041628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2526651
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC1230994.872022293541925No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG800073.1665235919008996No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA779333.0844386502132664No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC510372.0199465616739314No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG470011.8602094234621243No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG404041.599112817717999No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT366681.4512491040511728No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG344661.3640981678910147No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA301441.1930416982796594No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC295471.169413583435148No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT234030.9262458487539436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT233380.9236732734358643No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT204560.8096092416404166No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC203110.8038704197770091No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG195410.7733952967782254No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC187150.740703801197712No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT183160.7249121465528876No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT162220.6420356432289224No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC157610.6237901475114688No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT156330.6187241530389437No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA154510.6115209421483221No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG149380.5912173861764051No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC147330.5831038794040017No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC144160.5705576274681387No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT134890.5338687456241483No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG134380.5318502634515017No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT133200.5271800497971425No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG131820.5217182745064515No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT129010.5105968335159862No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG128320.5078659458706406No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT124200.4915597761622005No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC123000.4868104063442082No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG116850.4624698860269978No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT112010.44331409442776226No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA105300.4167572015288222No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCT102620.40615027560197275No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCT96890.3834720347210596No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC93730.37096536086701326No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG91600.362535229440077No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT84880.33593875845932025No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCT84560.334672259841189No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT79750.3156352024874033No Hit
AAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG76850.30415755876058864No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA72100.2853579698977025No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTC70600.2794212576252122No Hit
CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGG65020.25733668797154813No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCT63360.25076672638999215No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA62900.24894613462642842No Hit
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC61640.24395929631753654No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59960.23731017857234735No Hit
CTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA59120.23398561969975276No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT59020.23358983888158674No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58760.2325608087543551No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCTGT57140.2261491595000655No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCT55850.22104358694572382No Hit
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACA55810.22088527461845742No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGT52160.20643927475539758No Hit
CTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC50040.19804872141027788No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT49500.19591150499218135No Hit
ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG46470.18391934620175085No Hit
GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA45990.18201959827455394No Hit
ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG45360.179526179120108No Hit
TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGT41260.16329916557530105No Hit
GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT39690.1570854067300945No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCA39270.1554231272937972No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37740.14936768077585705No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA35110.13895864525809065No Hit
GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAG34110.13500083707643043No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT34030.1346842124218976No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA31090.12304825636781654No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC29390.11631998245899414No Hit
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA26760.10591094694122774No Hit
AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG26560.1051193853048957No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCA26430.10460487024127986No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGAG950.029.2105271
CTACCCG358.8723487E-426.42857210
CACGCAG4250.026.1176475
AAAAAGT24650.023.7910771
CGAGAGT1250.023.684
AAAAGTA25000.023.4582
TATAACG5400.023.2962972
TATCACG4850.023.2680422
GTACTAG400.001931824523.1251
GTCTTAT400.001931824523.1251
GTATAAC5700.023.0438611
TAAGTTC903.8344297E-922.611113
ACGAGAG1250.022.1999993
GGGCTGT23300.021.51716637
ATCACGC5250.021.4952373
CGTTATA957.1559043E-921.4210532
TCACGCA5650.021.2831864
GACTGTC4200.021.14285937
TGGGCTG23900.020.97698836
ATAACGC7400.020.253