Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041624.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6818942 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 39950 | 0.5858680129556755 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37511 | 0.5501000008505719 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 30711 | 0.45037778587939303 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 25991 | 0.3811588366641042 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 18906 | 0.2772570876831039 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18840 | 0.27628919559661896 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 15758 | 0.23109156816409349 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 10672 | 0.1565052173782971 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 8878 | 0.130196150663842 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 8670 | 0.12714582408825298 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 8312 | 0.1218957427706527 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 7658 | 0.11230481209548344 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 7515 | 0.110207712574766 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 7084 | 0.10388708394938687 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 455 | 0.0 | 17.076923 | 2 |
AAGACGG | 2305 | 0.0 | 16.212582 | 5 |
GACGGAC | 2240 | 0.0 | 15.609376 | 7 |
CGCAAGA | 2385 | 0.0 | 15.436059 | 2 |
ACGGACC | 2300 | 0.0 | 15.363043 | 8 |
ATAACGC | 1955 | 0.0 | 15.046036 | 3 |
CAAGACG | 2775 | 0.0 | 15.0 | 4 |
TATACTG | 845 | 0.0 | 14.887575 | 5 |
GTACGTA | 350 | 0.0 | 14.8 | 13 |
AGACGGA | 2500 | 0.0 | 14.43 | 6 |
CGGACCA | 2535 | 0.0 | 14.157791 | 9 |
GCGCAAG | 2635 | 0.0 | 14.111955 | 1 |
ACTCTAA | 2275 | 0.0 | 13.824176 | 10 |
TAAACGC | 2180 | 0.0 | 13.747706 | 28 |
TACGTAG | 365 | 0.0 | 13.684932 | 14 |
CGCATCG | 1450 | 0.0 | 13.651724 | 13 |
TAACGCC | 1455 | 0.0 | 13.604811 | 4 |
TAATACT | 1595 | 0.0 | 13.570532 | 4 |
TTCGGGC | 2105 | 0.0 | 13.446555 | 35 |
GTATTAG | 2465 | 0.0 | 13.434077 | 1 |