FastQCFastQC Report
Thu 28 Apr 2016
ERR1041614.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041614.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8290953
Sequences flagged as poor quality0
Sequence length42
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT456250.5502986206772611No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT342460.4130526370128983No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT220420.26585604815272745No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGC96110.11592153519625549No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTA90440.10908275562531834No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88100.10626040215159825No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA93000.022.6645161
GTATCAA212350.019.8182241
TTAACGG21550.015.03480335
TAACGGC21850.014.82837536
TCTATAC17800.014.0561813
GTATTAG42350.013.5584421
GCCGTTA21200.013.33018915
CCGTTAA21200.013.33018916
TAGGACC17700.013.1186454
AACGCAG318400.013.0703526
ATCAACG320350.013.0132673
TCAACGC324650.012.8131834
CGAACTA20700.012.78260929
CAACGCA328000.012.698785
CCGAGTT9000.012.613
GCGAACT20950.012.54415328
GGCACCG26200.012.5038179
TATCAAC335200.012.5011942
AGGTCGC20450.012.49877835
ACGCAGA337950.012.3035967