FastQCFastQC Report
Thu 28 Apr 2016
ERR1041611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7222424
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA33200.022.2891541
TCTTATA93700.017.09818637
CTTATAC52300.016.97896837
GTATCAA50050.014.6004012
CTCTTAT153750.014.35479637
TATACAC17800.013.92696637
TAATACT14350.012.8919864
GTATAGA8300.012.4819271
ATTAGAG9500.012.0736843
GTATTAG16950.012.0058981
ATAATAC9600.011.9479163
TCAACGC72350.011.9412573
TCGCTAA2951.6370905E-1111.91525514
GTATAAA8850.011.9152541
CAACGCA72850.011.73232654
ATCAACG73700.011.7225242
CGCGAAA2257.564631E-811.51111115
TATTAGA11900.011.5042022
GTATACG2952.1100277E-1011.2881361
GTATTAA6400.011.27343751
Produced by FastQC (version 0.11.5)