FastQCFastQC Report
Thu 28 Apr 2016
ERR1041609.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041609.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7794292
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA36600.023.4030061
CTTATAC55250.016.90950237
TCTTATA98850.016.2635337
GTATCAA56650.014.9567532
CTCTTAT154350.013.68772437
GTATTAG16300.012.25766851
TAATACT21750.011.9080464
TCTCTTA230900.011.54547437
ATCAACG78100.011.53585152
TCAACGC79300.011.4312733
CAACGCA80650.011.1252334
TATACTG13450.011.0037175
TATCAAC84800.010.6680421
TTAACGG5900.010.66101735
TCTAATA14200.010.5528162
TAGACAG11650.010.4806875
AACGCAG87450.010.4505435
ATACCGA2851.6714694E-810.3859656
GGGTAAG10350.010.367151
CTAATAC16700.010.1916173
Produced by FastQC (version 0.11.5)