FastQCFastQC Report
Thu 28 Apr 2016
ERR1041604.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041604.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2552830
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA13950.022.279571
TCTTATA25100.017.02589637
CTTATAC14250.015.44912337
GTATCAA20200.015.202972
GTATTAC2353.6379788E-1214.1702141
TATACTG3700.014.0000015
CTCTTAT39700.013.14105837
TACCCCG2408.185452E-1113.1041675
AATTGCG850.00940884113.05882525
AATACCG1451.37341685E-512.7586195
CAACGCA30650.012.3132134
TCAACGC30200.012.1903963
TTAATAC2756.184564E-1112.1090923
TAATACA3550.011.9859154
TTAACGG1705.3150943E-611.97058935
TATGCAC3103.6379788E-1211.9354843
GTATTAG4050.011.8765431
TAGGACA3900.011.8589744
ATCAACG30900.011.7944992
TAAGATA2205.5315468E-811.7727274
Produced by FastQC (version 0.11.5)