FastQCFastQC Report
Thu 28 Apr 2016
ERR1041603.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041603.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12557999
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA38900.019.7840611
TCTTATA115650.016.25248737
CTTATAC68150.015.63609737
GTATCAA56150.013.5414082
TATACTG23250.013.4473115
GTATTAG29650.013.3524451
CTCTTAT180400.013.06485637
TTAACGG9550.012.7853435
ATAATAC22450.011.4543433
TATACCA22350.011.2572715
TAGACCG3301.0913936E-1111.2121215
TAGACTG16200.011.1913585
TAGACAG22350.011.1744975
TATTAGA24150.011.1076612
TTTAACG12850.010.94163434
GTATAAA20700.010.814011
TAACGGC11300.010.8053136
TAATACT30850.010.7941654
TAATACG7800.010.6730784
TCAACGC71650.010.6636433
Produced by FastQC (version 0.11.5)