FastQCFastQC Report
Thu 28 Apr 2016
ERR1041602.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041602.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4750668
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA22500.024.5844461
CTTATAC36200.017.477937
TCTTATA63200.016.8607637
GTATCAA35200.015.4517042
TATACTG5850.014.8632485
GTATTAG11550.014.7359321
GTATACG1803.3396645E-914.3888891
TATTAGA9650.014.1865292
ATTAGAG8150.013.8466273
TAATACG2900.013.3965514
CTCTTAT100450.013.35241537
TTAACGC1409.573081E-613.21428535
CGAACTA6350.013.11023724
GTATAGA5700.012.9824571
TAATACT11400.012.4956154
GTACTAA2756.184564E-1112.1090911
TTTAACG6150.012.0325234
TAGACAG8200.011.9573175
TACGCAG2205.5360942E-811.7727275
CAACGCA48600.011.6100824
Produced by FastQC (version 0.11.5)