FastQCFastQC Report
Thu 28 Apr 2016
ERR1041601.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041601.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10132038
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA37450.022.279041
TCTTATA117600.016.6751737
CTTATAC69300.016.36435737
GTACTAG7000.014.0071421
GTATCAA62100.013.8824471
GTATTAG36300.013.81129551
CTCTTAT188700.013.647058537
TATTAGA26550.013.517892
TAATACT37400.013.0093594
ATTAGAG20700.012.8695643
TTAACGG14000.012.28928635
TATACTG15600.012.0961545
TCTATAC10400.012.0961543
CTAATAC31700.012.0220813
CAACGCA83800.011.9433174
TCAACGC84500.011.8881663
ATCAACG86300.011.7259552
TTAGAGG31600.011.5917724
TTTAACG16600.011.59036234
TAACGGC15050.011.55481836
Produced by FastQC (version 0.11.5)