FastQCFastQC Report
Thu 28 Apr 2016
ERR1041600.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041600.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5747868
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA32000.026.5937481
TCTTATA82750.017.46042337
CTTATAC48500.016.40206337
GTATCAA54450.015.5270892
CTCTTAT138300.014.50036137
TATTAGA18200.013.7225272
GTATTAG24700.013.7064781
ATACTGG16700.013.2934136
ATTAGAG15050.013.1528243
TTAGAGG22550.012.5521074
TATACTG6900.012.3333335
TTAACGG11800.012.22881335
ATCAACG79750.012.1090912
TCGCTAA4000.012.02514
TTAACGA1851.0413842E-612.04
CAACGCA81550.011.8418154
CGTAGCG3750.011.83999915
AATCGTC3450.011.79710128
TCAACGC81750.011.7902143
GCGAACT14750.011.7898323
Produced by FastQC (version 0.11.5)