FastQCFastQC Report
Thu 28 Apr 2016
ERR1041594.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041594.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9935120
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC70200.017.31410237
TCTTATA116200.016.22332237
GTATTAG27600.014.0760871
ATTAGAG20750.013.5518073
CTCTTAT185850.013.50793637
GGTATCA70150.013.054171
TTAACGG13350.013.026216535
TATACCG3000.012.955
TCGCTAA4600.012.86956514
TATTAGA24750.012.707072
TTTAACG15700.012.6082834
TACCCCG12400.012.5322575
TAATACT27300.012.3333324
TAACGGC14650.011.99658736
TAATACG7750.011.9354854
TCTATAC9750.011.5743593
TTAGACT9450.011.3544984
GTATAAA15250.011.2819671
CTACACT17550.011.1737894
GTTTAGG17550.010.9629631
Produced by FastQC (version 0.11.5)