Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041592.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2418550 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7657 | 0.3165946538215046 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6615 | 0.2735109879886709 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5028 | 0.20789315912426867 | No Hit |
CCCACGCCCTCTGCATCTTTTTTCTTTTCCCCCACGGATCTTT | 2562 | 0.10593123979243761 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4365 | 0.0 | 23.268042 | 1 |
TATACCG | 155 | 0.0 | 20.290323 | 5 |
GTACTAG | 245 | 0.0 | 17.367346 | 1 |
ATACCGA | 190 | 1.8189894E-12 | 16.552631 | 6 |
TCTTATA | 3790 | 0.0 | 15.717678 | 37 |
GTATCAA | 6505 | 0.0 | 15.613374 | 2 |
TACCGAC | 195 | 4.1836756E-11 | 15.179487 | 7 |
GTATTAG | 515 | 0.0 | 15.087378 | 1 |
CAATGCG | 200 | 6.184564E-11 | 14.8 | 19 |
TATACAC | 775 | 0.0 | 14.56129 | 37 |
TGCGACG | 205 | 9.276846E-11 | 14.439024 | 22 |
CTTATAC | 2350 | 0.0 | 14.170213 | 37 |
ATTAGAG | 400 | 0.0 | 13.875001 | 3 |
TACTAGG | 340 | 0.0 | 13.6029415 | 2 |
GAACCGT | 125 | 4.8487054E-5 | 13.32 | 6 |
ACCGGTT | 85 | 0.0094086565 | 13.058824 | 13 |
CCGACCG | 255 | 1.6370905E-11 | 13.058824 | 9 |
TAGTACT | 385 | 0.0 | 12.974026 | 4 |
CTCTTAT | 6005 | 0.0 | 12.754371 | 37 |
GTTCGGT | 160 | 2.6982998E-6 | 12.71875 | 11 |