FastQCFastQC Report
Thu 28 Apr 2016
ERR1041590.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041590.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1246388
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAACCG450.003825985620.5555575
CGTAATA555.1434286E-420.1818182
TATAGTG852.7234133E-517.4117645
CTTATAC4200.016.73809437
TAATACA1504.671165E-916.0333334
CTCTTAT12200.015.92213237
GGTATCA13350.015.7977531
ATAATAC1302.5892768E-715.6538463
AACCGCG750.00410466414.87
TCTTATA6750.014.837
TTATAGT1508.101597E-814.84
TACACTC1702.4365363E-814.1470595
ATTAGAC800.006299013713.8750013
TAGGTCG800.006299013713.8750019
GTTATAC1203.300797E-513.8750013
TAGAACA2102.040906E-913.2142854
TTATACT1703.7310565E-713.0588244
GGATTAG1000.001832631912.9499991
TTAGACT1153.577543E-412.8695654
ATAAAAC2451.1459633E-1012.8367343
Produced by FastQC (version 0.11.5)