FastQCFastQC Report
Thu 28 Apr 2016
ERR1041589.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041589.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3870671
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA41800.018.1459351
ATTAGAG8000.017.1125013
TCTTATA45100.017.02328137
CTTATAC26050.016.97312737
TATTAGA9100.016.2637372
ACGCTTA803.3851547E-416.187518
TTAACGC1302.5933878E-715.65384635
GTATTAG12600.014.8293651
CTCTTAT75250.014.2837237
TTAGAGG11100.013.8333334
GTCTTAC2651.8189894E-1213.2641521
GTATCAA58800.012.8996592
GCGGAAT3300.012.89393919
TATACCG1602.6994894E-612.718755
TATACTG3550.012.5070425
GTATAAA4900.012.4591841
TATACAC9800.012.08163337
GTATAGA3850.012.0129861
CGCTTAG1257.2254887E-411.8419
TTAAGAC3650.011.6575353
Produced by FastQC (version 0.11.5)