FastQCFastQC Report
Thu 28 Apr 2016
ERR1041587.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041587.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2583550
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC15800.018.96835337
GTATTAG6250.017.4641
TCTTATA27050.016.34565537
ATTAGAG4250.016.1058833
TCTATCG1101.4531839E-515.13636431
TACCCCG3750.014.8000015
TCGCTAA1252.9620205E-614.80000114
TAATACT5700.014.6052634
CTATAGG3500.014.2714292
GTATTAA1702.440538E-814.1470591
GGTATCA19400.013.7319581
CGTCTAA1501.3071895E-613.5666671
AATACTG6300.013.5079375
TATTAGA5400.013.0185182
CTCTTAT42150.012.86002437
TATAACT2900.012.758624
CTCTAAT4250.012.6235291
TAGACAG2653.274181E-1112.5660385
ATCTTAT2951.8189894E-1212.5423731
TTAGACT1807.4723357E-712.3333334
Produced by FastQC (version 0.11.5)