FastQCFastQC Report
Thu 28 Apr 2016
ERR1041584.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041584.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4106411
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA22900.019.4694331
CTTATAC28100.018.1049837
TCTTATA48200.016.3122437
TAATACG2150.015.4883724
TATACCG1101.4535994E-515.1363645
TAGACTA2450.015.102045
TTAGACT3500.014.7999994
CTCTTAT81200.014.3762337
CTAGACT3400.014.14705854
TAATACT9100.013.4175824
TATACTG5250.013.3904775
GTATAAA5700.013.3070181
GTATCAA34000.013.1676472
ATTAGAG7650.013.0588243
TTAGAGT2703.6379788E-1213.0185184
TATTAGA8850.012.5423732
CTAATAC9000.012.5388893
TATACAC9900.012.52020137
GTATTAA3600.012.3333341
TCTATAC3001.8189894E-1212.3333333
Produced by FastQC (version 0.11.5)