FastQCFastQC Report
Thu 28 Apr 2016
ERR1041583.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041583.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13731058
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA61800.019.1585751
TCTTATA109950.015.68167337
CTTATAC67650.015.42350437
TTAACGG16050.015.21495235
TAACGGC17150.014.23906736
GTATTAG36850.014.1071911
TTTAACG19750.013.48860634
TATTAGA33250.013.0751882
CTCTTAT173200.013.04185937
GTATCAA94700.012.5807811
ATTAGAG29200.012.5445213
CTAATAC32200.012.4099383
TAATACT35300.012.3682724
TATACTG23250.012.3333345
AACGGCC20950.011.83293537
ATAATAC26050.011.5758153
GTATAGA19300.011.5025911
GTATAGG24650.011.4077071
CTACACT25300.011.1877474
TAGGACC22600.011.1327444
Produced by FastQC (version 0.11.5)