FastQCFastQC Report
Thu 28 Apr 2016
ERR1041582.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041582.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13649448
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA53350.023.6148071
CTTATAC74400.015.7896537
TCTTATA124900.015.78943237
GTATTAG40400.014.4245051
GTATCAA88950.013.9763912
TTAACGG17800.013.40730435
TAATACG8950.013.229054
CTCTTAT195050.013.07946737
ATTAGAG28200.012.92375853
TAACGGC18900.012.529136
TATACTG23200.012.2801725
GGACCGT7600.012.1710536
CTAATAC32650.012.1255753
TATTAGA34600.012.0303482
TAATACT40900.011.8508564
TCAACGC119450.011.7861033
TTTAACG21050.011.77672334
ATCAACG118550.011.7507392
CAACGCA122550.011.503064
TCTGTCG23450.011.4392338
Produced by FastQC (version 0.11.5)