FastQCFastQC Report
Thu 28 Apr 2016
ERR1041580.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041580.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10606502
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA62100.021.6280171
CTTATAC80350.016.73864437
TCTTATA134600.016.28714837
CGCTATA9000.013.97777752
GTATTAG36150.013.9709541
TCGCTAA8200.013.76219514
GTATCAA97100.013.7178172
TATTAGA26450.013.5689982
CTCTTAT215450.013.28359337
ATTAGAG22650.012.7417223
CTAATAC33200.012.5933733
TAATACT36700.012.5517714
AACCGTA4100.011.7317077
TCGCTAT12100.011.6198351
TCTAATA27000.011.5111112
TTAGAGG30800.011.4123374
TTAACGG16650.011.33333335
ATCAACG135700.011.2472352
TAACCGG10750.011.18604722
CTAATCG6300.011.1587326
Produced by FastQC (version 0.11.5)