FastQCFastQC Report
Thu 28 Apr 2016
ERR1041579.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041579.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9366695
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA40150.024.6513061
CTTATAC62650.016.6544337
TCTTATA109250.016.18855937
GTATCAA63800.015.4553282
CTCTTAT171950.013.38412337
TATACCG3100.012.5322575
GTATTAG18350.012.5013631
GTACTAG6150.012.3333331
CTAATAC18300.012.0300543
ATCAACG88200.011.6621322
GTATAGA10950.011.6575351
TAATACT21900.011.4885854
TCAACGC89550.011.4656613
TAATACG5550.011.3333344
CAACGCA91500.011.2617484
TATTAGA17000.011.2088242
GTATTAA11250.011.1822221
GTATACG3155.638867E-1111.15873051
TCTATAC9200.011.0597833
TAATACA16250.010.8153854
Produced by FastQC (version 0.11.5)