FastQCFastQC Report
Thu 28 Apr 2016
ERR1041575.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041575.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12548522
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA77250.022.870551
TCTTATA130800.016.1945737
CTTATAC75000.015.73733437
GTATCAA119000.014.7689082
CTCTTAT202650.013.1275637
TAATACT25850.012.7388784
GTATTAG23450.012.5437111
CTAATAC20400.011.8799023
TTAGACT11450.011.794764
GAACCGT6600.011.7727276
TCGCTAA4100.011.73170714
ATCAACG170400.011.56252
TATACTG19200.011.5624995
TCTATAC13450.011.5539043
TCAACGC172250.011.4920183
CAACGCA173700.011.3747844
GTATAGA14350.011.2160281
TATCAAC179750.011.0433931
AACGCAG181850.010.9769045
TCTGTCG19450.010.9383038
Produced by FastQC (version 0.11.5)