Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041574.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11319327 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18688 | 0.1650981546871117 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 16539 | 0.1461129270317926 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 13778 | 0.12172101751279028 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7030 | 0.0 | 23.5 | 1 |
CTTATAC | 7650 | 0.0 | 17.629412 | 37 |
TCTTATA | 13730 | 0.0 | 15.630007 | 37 |
GTATCAA | 10745 | 0.0 | 15.375058 | 2 |
CTCTTAT | 21365 | 0.0 | 13.27428 | 37 |
CTAGACT | 1080 | 0.0 | 12.504629 | 4 |
ATCAACG | 15930 | 0.0 | 12.2868805 | 2 |
GTATTAG | 1755 | 0.0 | 12.227921 | 1 |
TCAACGC | 16180 | 0.0 | 12.1542015 | 3 |
TATCAAC | 16385 | 0.0 | 11.956973 | 1 |
CAACGCA | 16465 | 0.0 | 11.853932 | 4 |
AACGCAG | 17160 | 0.0 | 11.4385195 | 5 |
GTATAGG | 1310 | 0.0 | 11.29771 | 1 |
TATACTG | 1890 | 0.0 | 11.256614 | 5 |
TAATACT | 1905 | 0.0 | 10.973753 | 4 |
TAGACCG | 290 | 1.899025E-9 | 10.844828 | 5 |
TTTCGCG | 240 | 1.8469837E-7 | 10.791667 | 28 |
TCTCTTA | 30790 | 0.0 | 10.779149 | 37 |
TATACCG | 395 | 0.0 | 10.772152 | 5 |
CTACACT | 1645 | 0.0 | 10.683891 | 4 |