FastQCFastQC Report
Thu 28 Apr 2016
ERR1041572.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041572.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16807610
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA76100.024.1156391
CTTATAC77900.015.27021837
GTATCAA122800.014.8994292
TCTTATA127450.014.74774537
TATACTG30750.013.416265
GTATTAG42550.012.478261
CTCTTAT185950.012.18741637
TTAACGG15450.011.9741135
TCTGTCG23450.011.7547988
TAATACT45600.011.6842114
TCTATAC21000.011.5404763
TAACGGC16000.011.44687636
GTCTCGC23900.011.2238481
TAACCGG12400.011.18951622
TATTAGA37300.011.109922
ATCAACG170550.011.0967462
GTATTAA24950.010.97394851
GTATAGA25150.010.9602391
TCAACGC173350.010.9495243
TTAGACT18250.010.9479454
Produced by FastQC (version 0.11.5)