FastQCFastQC Report
Thu 28 Apr 2016
ERR1041570.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041570.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14683941
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA79100.019.0613161
CTTATAC74200.015.7324837
TCTTATA125350.015.54088537
TTAACGG9800.013.21428535
CTCTTAT192900.013.05261837
GTATCAA117750.012.5847142
TAATACG8300.012.4819284
TAATACT32500.012.1246164
GTATTAG30900.011.854371
CTAATAC27350.011.7020113
TATACTG24950.011.0480975
GTCTATA11450.010.98691
TCTAGAC15150.010.8679873
TTTAACG13600.010.61029434
GTTCTAG21800.010.6077981
GTGTAAG27850.010.5619391
ATCAACG159850.010.4970272
TCAACGC159100.010.4767453
TAACGGC12550.010.46613536
CTACACT26900.010.3847584
Produced by FastQC (version 0.11.5)