FastQCFastQC Report
Thu 28 Apr 2016
ERR1041569.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041569.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15606310
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA60450.024.3912331
CTTATAC80150.017.12663837
TCTTATA144600.016.03077537
GTATCAA100300.014.5343962
CTCTTAT220250.012.77570937
TCTGTCG35050.011.5592018
CTAATAC24000.011.4854163
TATACCG6950.011.4460435
TTAACGG7200.011.30555535
TATACTG27200.011.29044155
ATCAACG139050.011.2822722
TCAACGC140450.011.1698113
CAACGCA141350.011.1248674
TAATACT31000.011.0403234
GTCTCGC34300.011.0029151
GTATTAG27250.010.7944961
TATCAAC148350.010.69969751
ATACCGA6650.010.5714286
GTCCTAA20500.010.55853751
TCTCTTA320400.010.55493137
Produced by FastQC (version 0.11.5)