FastQCFastQC Report
Thu 28 Apr 2016
ERR1041567.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041567.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9308648
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA32700.019.7446481
CTTATAC50950.018.19136437
TCTTATA89700.016.45819337
GTATCAA44500.014.0516842
TATACTG15900.013.8459115
CTCTTAT137350.013.15944637
TTATACT15750.012.4507934
TAGACAG16500.012.4454555
TTTATAC12050.012.4356843
CTAGTAC6900.012.0652173
TCAACGC61150.012.010633
TATACCG3400.011.9705895
TCTAGAC9900.011.9595973
CAACGCA60500.011.925624
GTATTAA10400.011.9182691
GTATTAG14600.011.9109591
TTAGACT8000.011.7937514
ATCAACG63800.011.656742
TATACTT12600.011.4523815
GTATATA11150.011.2825111
Produced by FastQC (version 0.11.5)