Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041565.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1410252 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14743 | 1.045415996573662 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 13737 | 0.9740812280358404 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 9509 | 0.6742766541015365 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4996 | 0.3542629260586051 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 2182 | 0.1547241202281578 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 1489 | 0.1055839665534954 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1433 | 0.10161304504443178 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAAATCG | 55 | 5.143891E-4 | 20.181818 | 5 |
TGCGACG | 130 | 3.274181E-11 | 19.923077 | 22 |
CAATGCG | 150 | 0.0 | 19.733334 | 19 |
TAGACTG | 85 | 1.2457185E-6 | 19.588236 | 5 |
ACGAGTC | 135 | 5.638867E-11 | 19.185184 | 26 |
CGACGAG | 155 | 2.1827873E-11 | 17.903227 | 24 |
ACGGACC | 290 | 0.0 | 17.862068 | 8 |
TCTAGAC | 105 | 4.799167E-7 | 17.619047 | 3 |
TACACCG | 160 | 3.45608E-11 | 17.34375 | 5 |
CTAGATA | 150 | 2.5102054E-10 | 17.266666 | 3 |
ATGCGAC | 150 | 2.5102054E-10 | 17.266666 | 21 |
TAAGGGT | 140 | 1.869921E-9 | 17.178572 | 4 |
AATGCGA | 195 | 0.0 | 17.076923 | 20 |
GTACTAG | 230 | 0.0 | 16.891304 | 1 |
GACGGAC | 300 | 0.0 | 16.65 | 7 |
TACGGGC | 115 | 1.242608E-6 | 16.086956 | 4 |
TACCGCA | 345 | 0.0 | 16.086956 | 28 |
CTTCGGG | 280 | 0.0 | 15.857143 | 34 |
ATACCGA | 105 | 9.346026E-6 | 15.857142 | 6 |
CCGGTCG | 200 | 3.6379788E-12 | 15.724999 | 20 |