Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041553.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9242524 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 36404 | 0.3938750929940783 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29022 | 0.31400513539375174 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 26650 | 0.2883411501014225 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12821 | 0.13871751915385885 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGCGG | 1115 | 0.0 | 17.753365 | 29 |
GACGGAC | 1590 | 0.0 | 17.45283 | 7 |
AAGACGG | 1690 | 0.0 | 17.405327 | 5 |
TCTAGCG | 1150 | 0.0 | 16.891304 | 28 |
ACGGACC | 1660 | 0.0 | 16.828314 | 8 |
CGCAAGA | 1685 | 0.0 | 16.468843 | 2 |
AGACGGA | 1865 | 0.0 | 15.573728 | 6 |
CTAACGC | 155 | 7.228664E-9 | 15.5161295 | 3 |
CGGACCA | 1855 | 0.0 | 15.15903 | 9 |
TATACTG | 1765 | 0.0 | 14.988668 | 5 |
GCGCAAG | 2100 | 0.0 | 14.4476185 | 1 |
TAACGGC | 655 | 0.0 | 14.404579 | 36 |
GTATTAG | 3365 | 0.0 | 14.349184 | 1 |
CGCAATA | 1380 | 0.0 | 14.344202 | 36 |
TTAACGG | 650 | 0.0 | 14.230769 | 35 |
CGTTCGG | 360 | 0.0 | 13.875001 | 24 |
CGTAGCG | 380 | 0.0 | 13.631579 | 15 |
TAGGACG | 870 | 0.0 | 13.609196 | 4 |
ATCGATA | 610 | 0.0 | 13.344261 | 23 |
GTATAGG | 2045 | 0.0 | 13.207824 | 1 |