Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041529.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1519761 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6299 | 0.41447306517274757 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6167 | 0.40578748895385525 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3995 | 0.26287028026117265 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2289 | 0.1506157876139735 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1540 | 0.10133172255374365 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCGTG | 65 | 6.9040005E-5 | 19.923077 | 5 |
AAGACGG | 375 | 0.0 | 17.759998 | 5 |
CGAGCCG | 335 | 0.0 | 17.671642 | 15 |
CTAGCGG | 160 | 3.45608E-11 | 17.34375 | 29 |
GACGGAC | 390 | 0.0 | 16.602564 | 7 |
TACCGTC | 280 | 0.0 | 16.517857 | 7 |
GCGCAAG | 405 | 0.0 | 16.444445 | 1 |
TCGTTTA | 275 | 0.0 | 16.145454 | 30 |
CGTCGTA | 275 | 0.0 | 16.145454 | 10 |
ACGGACC | 390 | 0.0 | 16.128206 | 8 |
TATACTG | 405 | 0.0 | 15.987655 | 5 |
CGACGGT | 255 | 0.0 | 15.960784 | 7 |
ACACCGC | 70 | 0.0025930097 | 15.857142 | 6 |
ATAGACG | 70 | 0.0025930097 | 15.857142 | 3 |
CAAGACG | 420 | 0.0 | 15.857142 | 4 |
GCGTAGA | 70 | 0.0025930097 | 15.857142 | 1 |
GCGATGC | 225 | 0.0 | 15.622222 | 32 |
CGCAATA | 225 | 0.0 | 15.622222 | 36 |
AACGCCG | 285 | 0.0 | 15.578947 | 5 |
CCGTCGT | 290 | 0.0 | 15.310345 | 9 |