Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041518.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5394090 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 36894 | 0.6839707902537777 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 24452 | 0.4533109384530106 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19571 | 0.36282301555962176 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16070 | 0.2979186480017946 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 14300 | 0.26510495746270457 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 9361 | 0.17354178369289353 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 8127 | 0.15066489435660138 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 7142 | 0.1324041682656389 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 6832 | 0.12665713771924458 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 6789 | 0.12585996896603505 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 5820 | 0.10789586380649933 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCTAAT | 1715 | 0.0 | 14.131195 | 1 |
TAATACT | 2600 | 0.0 | 13.875 | 4 |
TTAACGG | 1200 | 0.0 | 13.720834 | 35 |
AATACTG | 2185 | 0.0 | 13.716247 | 5 |
GTATTAG | 2065 | 0.0 | 13.438256 | 1 |
TAACGGC | 1245 | 0.0 | 13.373494 | 36 |
ATTAGAG | 1535 | 0.0 | 13.257329 | 3 |
ATACCGA | 155 | 1.891005E-6 | 13.129032 | 6 |
TACTGGT | 1950 | 0.0 | 12.997436 | 7 |
CTACGCT | 290 | 0.0 | 12.75862 | 30 |
AACGGCC | 1375 | 0.0 | 12.512727 | 37 |
GGTAAAC | 1730 | 0.0 | 12.404624 | 35 |
ATACTGG | 2195 | 0.0 | 12.389523 | 6 |
CTAATAC | 2275 | 0.0 | 12.360439 | 3 |
CGAACGA | 165 | 3.8103117E-6 | 12.333333 | 14 |
GGGTACG | 180 | 7.4773743E-7 | 12.333333 | 1 |
GTATACG | 285 | 9.094947E-12 | 12.333333 | 1 |
TTAATAC | 680 | 0.0 | 12.242648 | 3 |
TACTCGC | 410 | 0.0 | 12.182927 | 20 |
GATGCTA | 1855 | 0.0 | 12.167116 | 14 |