FastQCFastQC Report
Thu 28 Apr 2016
ERR1041513.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041513.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6387236
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG11200.014.04017935
GGTATCA58700.013.6780241
GTATTAG20050.013.1945141
TAACGGC12150.013.0946536
TATACTG8200.013.0853665
ATTAGAG14550.012.5876293
TTTAACG13500.012.19629634
TATTAGA16350.011.6544352
TCTATAC5900.011.6016953
TCTAATA14700.011.5782322
TACCCCG9800.011.51530555
GTATAGG14550.011.3161521
CTACACT13600.011.1544124
CTAGACA9500.011.14
TAGACAG9200.011.0597825
TAATACT17900.011.0586594
GTACCGT1851.3619203E-511.06
CTAATAC17850.010.8823543
GGGGTTA9750.010.8153856
GTATTAA6350.010.7795271
Produced by FastQC (version 0.11.5)