FastQCFastQC Report
Thu 28 Apr 2016
ERR1041506.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041506.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22368732
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1282510.5733494415329398No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1220160.545475711363523No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT916340.4096521877055883No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT539120.241015002549094No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA490000.016.0421431
TTAACGG13750.012.78181835
GTATTAG49000.011.62857151
GTATCAA680250.011.5337742
TATACTG39800.011.3417085
AACGCAG737900.010.5649815
TAATACT54550.010.1402394
GTACTAG16100.09.9968941
AGTACGG434000.09.9362912
GAGTACG437400.09.9351851
TAGACAG35050.09.8174045
TAACGGC18100.09.70994536
CTAATAC47750.09.6858643
TTAGACT25900.09.54
TCTATAC31800.09.4827043
CTACACT41450.09.4620034
CTAGTAC17400.09.3563223
GTAATAC28750.09.2660883
TCTAGAC21050.09.2280293
ACGCAGA852100.09.1555586