Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041493.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5776272 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 28597 | 0.4950771016323331 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28022 | 0.48512258425503507 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20861 | 0.3611498904483722 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12413 | 0.21489638992069626 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11960 | 0.0 | 14.509198 | 1 |
TAGACCG | 100 | 0.0018340332 | 12.950001 | 5 |
TCTAGAC | 525 | 0.0 | 12.685714 | 3 |
TTAACGG | 395 | 0.0 | 12.64557 | 35 |
CTACGCT | 305 | 1.8189894E-12 | 12.131147 | 30 |
GTACTAG | 385 | 0.0 | 12.012986 | 1 |
GTATTAG | 1405 | 0.0 | 11.455516 | 1 |
GTATAGG | 1035 | 0.0 | 11.439613 | 1 |
TATACTG | 960 | 0.0 | 11.177084 | 5 |
GACGCTA | 365 | 0.0 | 11.150685 | 26 |
TAGGACG | 285 | 1.4224497E-9 | 11.035088 | 4 |
TCTACGC | 240 | 1.8462924E-7 | 10.791667 | 3 |
CGCTATC | 360 | 5.456968E-12 | 10.791666 | 33 |
GTATCAA | 16590 | 0.0 | 10.471067 | 2 |
TAATACT | 1505 | 0.0 | 10.448505 | 4 |
GGGGTTA | 780 | 0.0 | 10.435897 | 6 |
TAGACAG | 840 | 0.0 | 10.351191 | 5 |
TAGAACC | 840 | 0.0 | 10.351191 | 4 |
TAGGGGT | 825 | 0.0 | 10.315152 | 4 |
TTAGGAC | 780 | 0.0 | 10.198717 | 3 |