Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041487.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9639246 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 21817 | 0.2263351303618561 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21459 | 0.2226211469237324 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 14944 | 0.15503287290312956 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9995 | 0.0 | 17.898449 | 1 |
GTATCAA | 14295 | 0.0 | 12.436866 | 2 |
CGTATTA | 440 | 0.0 | 12.193182 | 15 |
TATACTG | 1510 | 0.0 | 12.006623 | 5 |
CTAATAC | 2475 | 0.0 | 11.585858 | 3 |
TAACCGG | 590 | 0.0 | 11.288136 | 22 |
GTATTAG | 2480 | 0.0 | 11.264112 | 1 |
GGACCGT | 695 | 0.0 | 11.179856 | 6 |
CTAGTAC | 615 | 0.0 | 11.130081 | 3 |
TAATACT | 2220 | 0.0 | 11.0 | 4 |
TTAACGG | 815 | 0.0 | 10.895705 | 35 |
ATCCGTA | 415 | 0.0 | 10.698795 | 12 |
GTATTAA | 1255 | 0.0 | 10.613545 | 1 |
GTATAAA | 1600 | 0.0 | 10.521875 | 1 |
TAATACC | 1190 | 0.0 | 10.415967 | 4 |
CTACACT | 1675 | 0.0 | 10.38209 | 4 |
TAGTACT | 1185 | 0.0 | 10.303798 | 4 |
AACGCAG | 18400 | 0.0 | 10.275544 | 5 |
GTACTAG | 595 | 0.0 | 10.260505 | 1 |
TAGACAG | 1595 | 0.0 | 10.206896 | 5 |