Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041485.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7758518 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 33841 | 0.43617866195580135 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29500 | 0.3802272547411761 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23712 | 0.3056253784550091 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14044 | 0.18101395137576531 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11160 | 0.0 | 18.947582 | 1 |
GTATCAA | 15805 | 0.0 | 13.297059 | 2 |
CGCGAAA | 185 | 1.3620249E-5 | 11.0 | 15 |
TTAACGG | 610 | 0.0 | 10.918033 | 35 |
AACGCAG | 18940 | 0.0 | 10.861669 | 7 |
CTAGTAC | 565 | 0.0 | 10.80531 | 3 |
GTATTAG | 1990 | 0.0 | 10.783919 | 1 |
CTACACT | 1270 | 0.0 | 10.779528 | 4 |
TTAGGAC | 1325 | 0.0 | 10.6113205 | 3 |
TAACGGC | 635 | 0.0 | 10.488189 | 36 |
ATCAACG | 20240 | 0.0 | 10.337698 | 4 |
TAGGACC | 1190 | 0.0 | 10.260504 | 4 |
CGCGATA | 145 | 0.002495265 | 10.206897 | 14 |
TTCGCGA | 145 | 0.002495265 | 10.206897 | 19 |
TCAACGC | 20550 | 0.0 | 10.199757 | 5 |
CAACGCA | 20690 | 0.0 | 10.103915 | 6 |
TATCAAC | 21435 | 0.0 | 10.020293 | 3 |
TCTAGAC | 640 | 0.0 | 9.828125 | 3 |
GAGTACG | 11015 | 0.0 | 9.808443 | 1 |
AGTACGG | 10990 | 0.0 | 9.696088 | 2 |